Variant Analysis workshop, Sep 12 - 15 Overview This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. We will look at a complete workflow, from data QC to functional interpretation of variant calls. The practical sessions will focus on running the GATK pipeline from the Broad institute. https://gatk.broadinstitute.org/hc/en-us Who this course is for This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line - our 1-day "Linux for bioinformatics" course is a suitable background. Instructor Frances Turner – Bioinformatician and Software Developer, Edinburgh Genomics Workshop format The workshop consists of presentations and hands-on tutorials. Topics covered By the end of the course students will have covered: Introduction to short read data Whole genome sequencing (WGS) data QC Data preprocessing Short variant discovery Germline joint variant calling Genotype refinement Variant filtering and evaluation Variant annotation and interpretation Somatic short variant discovery Related Links Edinburgh Genomics Sep 12 2022 10.30 - Sep 15 2022 16.30 Variant Analysis workshop, Sep 12 - 15 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. Register here
Variant Analysis workshop, Sep 12 - 15 Overview This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. We will look at a complete workflow, from data QC to functional interpretation of variant calls. The practical sessions will focus on running the GATK pipeline from the Broad institute. https://gatk.broadinstitute.org/hc/en-us Who this course is for This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line - our 1-day "Linux for bioinformatics" course is a suitable background. Instructor Frances Turner – Bioinformatician and Software Developer, Edinburgh Genomics Workshop format The workshop consists of presentations and hands-on tutorials. Topics covered By the end of the course students will have covered: Introduction to short read data Whole genome sequencing (WGS) data QC Data preprocessing Short variant discovery Germline joint variant calling Genotype refinement Variant filtering and evaluation Variant annotation and interpretation Somatic short variant discovery Related Links Edinburgh Genomics Sep 12 2022 10.30 - Sep 15 2022 16.30 Variant Analysis workshop, Sep 12 - 15 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. Register here
Sep 12 2022 10.30 - Sep 15 2022 16.30 Variant Analysis workshop, Sep 12 - 15 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data.
