Variant Analysis workshop, Feb 6 -9 Overview This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. We will look at a complete workflow, from data QC to functional interpretation of variant calls. The practical sessions will focus on running the GATK pipeline from the Broad institute. https://gatk.broadinstitute.org/hc/en-us Who this course is for This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line - our 1-day "Linux for bioinformatics" course is a suitable background. Instructor Frances Turner – Bioinformatician and Analyst, Edinburgh Genomics Heleen De Weerd - Bioinformatician and Analyst, Edinburgh Genomics Workshop format The workshop consists of presentations and hands-on tutorials. Topics covered By the end of the course students will have covered: Introduction to short read data Whole genome sequencing (WGS) data QC Data preprocessing Short variant discovery Germline joint variant calling Genotype refinement Variant filtering and evaluation Variant annotation and interpretation Somatic short variant discovery Related Links Edinburgh Genomics Feb 06 2023 09.30 - Feb 09 2023 15.30 Variant Analysis workshop, Feb 6 -9 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. Register here
Variant Analysis workshop, Feb 6 -9 Overview This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. We will look at a complete workflow, from data QC to functional interpretation of variant calls. The practical sessions will focus on running the GATK pipeline from the Broad institute. https://gatk.broadinstitute.org/hc/en-us Who this course is for This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line - our 1-day "Linux for bioinformatics" course is a suitable background. Instructor Frances Turner – Bioinformatician and Analyst, Edinburgh Genomics Heleen De Weerd - Bioinformatician and Analyst, Edinburgh Genomics Workshop format The workshop consists of presentations and hands-on tutorials. Topics covered By the end of the course students will have covered: Introduction to short read data Whole genome sequencing (WGS) data QC Data preprocessing Short variant discovery Germline joint variant calling Genotype refinement Variant filtering and evaluation Variant annotation and interpretation Somatic short variant discovery Related Links Edinburgh Genomics Feb 06 2023 09.30 - Feb 09 2023 15.30 Variant Analysis workshop, Feb 6 -9 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data. Register here
Feb 06 2023 09.30 - Feb 09 2023 15.30 Variant Analysis workshop, Feb 6 -9 This course aims to provide an introduction to the principles of short variant discovery (both germline and somatic) from short read data.
